XomeDxSlice Tool

Now Available - NEW XomeDxSlice Xpanded – Custom slice testing with trio analysis for lists >150 genes.

INSTRUCTIONS (AND TIPS)

ENTER GENES BELOW AND CLICK "ADD GENES TO SLICE"

If cutting and pasting from another document, please be sure to list EITHER one gene symbol per line OR enter a comma-separated list.


OR

SEARCH BY GENE SYMBOL OR PHENOTYPE (HPO TERM)

You may also use this search to review average exome sequencing coverage by entering the gene symbol below.

SELECTED GENES FOR YOUR SLICE

What do you want to do?

Place an e-order of this Slice on a specific patient through the GeneDx Portal  
Obtain a Slice ID to order testing with a printed requisition form  
Only email the gene list to myself and/or others at this time  


 
Phenotypes
Tubulointerstitial fibrosis

Select all: Gene symbolChrAvg % covered at 10xLocus TypeNoteOMIMPrevious symbol(s)Phenotype(s)Slice(s)
ACP519p13.2100%gene with protein product171640Abnormal form of the vertebral bodies; Abnormality of epiphysis morphology; Abnormality of the metaphysis; Autoimmune thrombocytopenia; Autosomal dominant inheritance; Autosomal recessive inheritance; Cellular immunodeficiency; Combined immunodeficiency; Decrease in T cell count; Delayed eruption of teeth; Hyperlordosis; Hypermelanotic macule; Hypopigmented skin patches on arms; Hypothyroidism; Immune dysregulation; Irregular vertebral endplates; Juvenile onset; Kyphoscoliosis; Kyphosis; Large iliac wings; Low-set ears; Lumbar hyperlordosis; Lymphadenopathy; Metaphyseal irregularity; Metaphyseal sclerosis; Micromelia; Narrow nose; Platyspondyly; Pneumonia; Progressive spastic quadriplegia; Purpura; Recurrent otitis media; Recurrent respiratory infections; Recurrent sinusitis; Restrictive ventilatory defect; Rheumatoid arthritis; Rhizomelia; Short stature; Spastic diplegia; Spondylometaphyseal dysplasia; Tubulointerstitial fibrosis; VitiligoAutoimmune Disorders
ANTXR12p13.398%gene with protein product606410Abnormal form of the vertebral bodies; Abnormality of metabolism/homeostasis; Abnormality of pelvic girdle bone morphology; Abnormality of the cerebral vasculature; Abnormality of the clavicle; Abnormality of the metaphysis; Abnormality of the palate; Alopecia; Anteverted nares; Autosomal recessive inheritance; Breast hypoplasia; Broad forehead; Delayed cranial suture closure; Delayed eruption of teeth; Delayed skeletal maturation; Depressed nasal bridge; Early balding; Everted lower lip vermilion; Frontal bossing; Glaucoma; Growth delay; High forehead; Hyperextensible skin; Hypertelorism; Hypoplastic nipples; Hypotrichosis; Joint hyperflexibility; Keratoconus; Long philtrum; Low-set ears; Mandibular prognathia; Micrognathia; Midface retrusion; Nystagmus; Optic atrophy; Palpebral edema; Prematurely aged appearance; Prominent scalp veins; Protruding ear; Short stature; Skin tags; Sparse and thin eyebrow; Sparse eyelashes; Thick lower lip vermilion; Thick nasal alae; Tubulointerstitial fibrosis; Umbilical hernia; Underdeveloped supraorbital ridges; Unerupted tooth; Visual impairment; Wide anterior fontanel
BSND1p32.3100%gene with protein product606412DFNB73Autosomal recessive inheritance; Congenital onset; Decreased glomerular filtration rate; Edema; Failure to thrive; Fetal polyuria; Generalized hypotonia; Global glomerulosclerosis; Heterogeneous; Hydrops fetalis; Hyperaldosteronism; Hyperchloriduria; Hypernatriuria; Hypochloremia; Hypokalemia; Hypokalemic hypochloremic metabolic alkalosis; Hyponatremia; Hyporeflexia; Increased urinary potassium; Intellectual disability; Motor delay; Polyhydramnios; Polyuria; Premature birth; Reduced renal corticomedullary differentiation; Renal insufficiency; Renal salt wasting; Sensorineural hearing impairment; Tubulointerstitial fibrosis
CLCN5Xp11.23100%gene with protein product300008NPHL2, NPHL1Aminoaciduria; Bone pain; Bowing of the legs; Bulging epiphyses; Chronic kidney disease; Delayed epiphyseal ossification; Enlargement of the ankles; Enlargement of the wrists; Femoral bowing; Fibular bowing; Focal segmental glomerulosclerosis; Glomerulosclerosis; Glycosuria; Hypercalciuria; Hyperphosphaturia; Hypophosphatemia; Hypophosphatemic rickets; Increased serum 1,25-dihydroxyvitamin D3; Low-molecular-weight proteinuria; Metaphyseal irregularity; Microscopic hematuria; Nephrocalcinosis; Nephrolithiasis; Osteomalacia; Phenotypic variability; Proximal tubulopathy; Recurrent fractures; Renal insufficiency; Renal phosphate wasting; Rickets; Short stature; Slow progression; Sparse bone trabeculae; Thin bony cortex; Tibial bowing; Tubular atrophy; Tubulointerstitial fibrosis; X-linked recessive inheritance
GBE13p12.299.98%gene with protein product607839Abnormal pyramidal signs; Abnormal upper motor neuron morphology; Abnormality of metabolism/homeostasis; Abnormality of the cerebral white matter; Adult onset; Arthrogryposis multiplex congenita; Ascites; Autosomal recessive inheritance; Behavioral abnormality; Cardiomyopathy; Cirrhosis; Cognitive impairment; Decreased fetal movement; Distal sensory impairment; Edema; Esophageal varix; Failure to thrive; Gait disturbance; Generalized hypotonia; Hemiparesis; Hepatic failure; Hepatosplenomegaly; Hydrops fetalis; Intellectual disability; Muscle weakness; Neurogenic bladder; Paresthesia; Peripheral axonal neuropathy; Polyhydramnios; Portal hypertension; Reduced tendon reflexes; Skeletal muscle atrophy; Skin ulcer; Slow progression; Spastic paraplegia; Spasticity; Tetraparesis; Tubulointerstitial fibrosis; Urinary bladder sphincter dysfunction; Urinary incontinenceRhabdomyolysis
MUC11q22100%gene with protein productPlease note that a variant in the variable number of tandem repeat region of this gene, similar to what has been reported in association with medullary cystic kidney disease, is not detectable by XomeDxSlice. 158340PUM, MCKD1Adult onset; Anemia; Autosomal dominant inheritance; Cerebral cortical atrophy; Decreased glomerular filtration rate; Elevated serum creatinine; Glomerulosclerosis; Gout; Hypertension; Hypotension; Impaired renal uric acid clearance; Renal cortical atrophy; Renal corticomedullary cysts; Renal hypoplasia; Renal salt wasting; Stage 5 chronic kidney disease; Tubular atrophy; Tubular basement membrane disintegration; Tubulointerstitial fibrosis; Tubulointerstitial nephritis
NPHP12q1398.95%gene with protein product607100NPH1Abnormal electroretinogram; Abnormality of retinal pigmentation; Anemia; Apnea; Ataxia; Autosomal recessive inheritance; Biparietal narrowing; Cerebellar vermis hypoplasia; Cognitive impairment; Delayed gross motor development; Elongated superior cerebellar peduncle; Feeding difficulties; Gait disturbance; Generalized hypotonia; Global developmental delay; Growth delay; Heterogeneous; Hypertension; Hypogonadism; Hypometric saccades; Hypoplasia of penis; Hypoplasia of the ovary; Hyposthenuria; Intellectual disability; Long face; Low-set, posteriorly rotated ears; Molar tooth sign on MRI; Multicystic kidney dysplasia; Muscular hypotonia; Nephronophthisis; Nephropathy; Nystagmus; Obesity; Oculomotor apraxia; Pigmentary retinopathy; Polydipsia; Polyuria; Postaxial hand polydactyly; Premature ovarian insufficiency; Progressive visual loss; Renal corticomedullary cysts; Renal insufficiency; Retinal dystrophy; Short stature; Stage 5 chronic kidney disease; Tapetoretinal degeneration; Thickened superior cerebellar peduncle; Tubular atrophy; Tubular basement membrane disintegration; Tubulointerstitial fibrosis; Visual impairmentHeterotaxy ; Nephrotic Syndrome
NPHP33q22.199.36%gene with protein product608002Abnormal biliary tract morphology; Abnormal liver parenchyma morphology; Abnormality of retinal pigmentation; Abnormality of the pancreas; Aortic valve stenosis; Asplenia; Atrial septal defect; Autosomal recessive inheritance; Bile duct proliferation; Biliary cirrhosis; Cholestasis; Cirrhosis; Dandy-Walker malformation; Enlarged kidney; Enuresis; Global developmental delay; Hepatic cysts; Hepatic fibrosis; Hepatomegaly; Hypertension; Intestinal malrotation; Multicystic kidney dysplasia; Nephronophthisis; Oligohydramnios; Pancreatic cysts; Pancreatic fibrosis; Patent ductus arteriosus; Polycystic kidney dysplasia; Polydipsia; Polyhydramnios; Polysplenia; Polyuria; Potter facies; Premature ovarian insufficiency; Progressive visual loss; Pulmonary hypoplasia; Renal corticomedullary cysts; Renal dysplasia; Renal insufficiency; Retinal dystrophy; Short stature; Stage 5 chronic kidney disease; Tubular atrophy; Tubulointerstitial fibrosis; Visual impairmentHeterotaxy
NPHP41p36.31100%gene with protein product607215Abnormality of retinal pigmentation; Amblyopia; Anemia; Autosomal recessive inheritance; Global developmental delay; Growth delay; Heterogeneous; Hypertension; Nephronophthisis; Polydipsia; Polyuria; Premature ovarian insufficiency; Progressive visual loss; Renal corticomedullary cysts; Retinal dystrophy; Rod-cone dystrophy; Rotary nystagmus; Severe visual impairment; Short stature; Stage 5 chronic kidney disease; Tubular atrophy; Tubulointerstitial fibrosis; Visual impairment
PKHD16p12.3-p12.299.97%gene with protein product606702TIGM1Absence of renal corticomedullary differentiation; Autosomal recessive inheritance; Biliary tract abnormality; Congenital hepatic fibrosis; Dehydration; Depressed nasal ridge; Enlarged kidney; Esophageal varix; Hepatic cysts; Hepatomegaly; Hypoplasia of the ear cartilage; Low-set, posteriorly rotated ears; Macrotia; Micrognathia; Multiple renal cysts; Oligohydramnios; Pancreatic cysts; Periportal fibrosis; Polycystic kidney dysplasia; Portal hypertension; Potter facies; Pulmonary hypoplasia; Renal cyst; Renal hypoplasia/aplasia; Renal insufficiency; Respiratory insufficiency; Splenomegaly; Tubulointerstitial fibrosisPolycystic Kidney Disease
PTPRO12p12.399.48%gene with protein product600579Autosomal recessive inheritance; Edema; Focal segmental glomerulosclerosis; Hypoalbuminemia; Nephrotic syndrome; Proteinuria; Tubulointerstitial fibrosis; Variable expressivityNephrotic Syndrome
REN1q32.1100%gene with protein product179820Anemia; Anuria; Autosomal dominant inheritance; Autosomal recessive inheritance; Chronic kidney disease; Focal segmental glomerulosclerosis; Hyperechogenic kidneys; Hyperuricemia; Hypotension; Microcephaly; Oligohydramnios; Potter facies; Pulmonary hypoplasia; Renal hypoplasia; Renotubular dysgenesis; Respiratory insufficiency; Tubular atrophy; Tubulointerstitial fibrosis; Widely patent fontanelles and suturesCongenital Kidney and Urinary Tract (CKUT) Anomalies
SFTPC8p21.3100%gene with protein product178620SFTP2Alveolar cell carcinoma; Alveolar proteinosis; Autosomal dominant inheritance; Bronchiectasis; Cirrhosis; Clubbing; Clubbing of fingers; Cough; Cyanosis; Exertional dyspnea; Failure to thrive; Gastroesophageal reflux; Ground-glass opacification on pulmonary HRCT; Heterogeneous; Honeycomb lung; Incomplete penetrance; Increased antibody level in blood; Interstitial pneumonitis; Pneumonia; Pulmonary arterial hypertension; Pulmonary fibrosis; Rales; Recurrent respiratory infections; Respiratory distress; Reticular pattern on pulmonary HRCT; Tachypnea; Tubulointerstitial fibrosis


The gene coverage data provided by GeneDx represent an estimate based on previous results, but the specific sequencing coverage data for the genes selected may vary from individual to individual, and cannot be predicted exactly. Changes to an approved gene list can only be made by contacting GeneDx directly at 888-729-1206 and asking to speak with a member of our Whole Exome Sequencing Laboratory.


  SUGGESTED CUSTOM SLICES  

Customize below OR enter Suggested Slice ID on printed requisition form
(e.g. 706 XomeDxSlice - Slice ID: CS-Albinism).

Suggested Slice IDSuggested Gene List Name
CS-AlbinismAlbinism
CS-AlportAlport Syndrome
CS-AAAplastic Anemia
CS-AutoImmuneAutoimmune Disorders
CS-BBSBardet-Biedl Syndrome
CS-BMFBone Marrow Failure Syndromes
CS-CVIDCommon Variable Immune Deficiency
CS-CKUTCongenital Kidney and Urinary Tract (CKUT) Anomalies
CS-DSDDisorders of Sex Development
CS-EDEctodermal Dysplasia
CS-FAFanconi Anemia
CS-AnemiaHemolytic Anemia
CS-HeterotaxyHeterotaxy
CS-IBDInflammatory Bowel Disease
CS-MaleInfMale Infertility
CS-WWSMuscular dystropy-dystroglycanopathy (Walker-Warburg)
CS-NephroticNephrotic Syndrome
CS-ObesityObesity
CS-PPKCIPalmoplantar keratoderma plus congenital ichthyosis
CS-PKDPolycystic Kidney Disease
CS-Primary ImmunodefPrimary Immunodeficiency
CS-RhabdoRhabdomyolysis
CS-SRTDShort-Rib Thoracic Dysplasia
CS-VACTERLVACTERL Association
CS-WSWaardenburg Syndrome